[18]. The strains were grown in 79CA to an OD600 of ~0.6, washed SRT1720 nmr twice in sterile water, and resuspended in 25 mM phosphate buffer (pH 6.8) to a final OD600 of 0.06. 200 μl of a bacterial suspension was placed onto a slide with modified Fåhraeus medium Ion Channel Ligand Library nmr containing a sterile germinated clover seedling with root ~2 cm long. The slides were incubated for 90 min at room temperature, and root attachment of tested strains

was observed under confocal laser scanning microscopy. To study plant root invasion by the Rt2472 and the Rt24.2, clover seedlings ~2 cm long were placed on the top of microscope slides, which were previously covered with 2 ml Fåhraeus agar, and inoculated with 100 μl of bacterial suspension in sterile water of OD600 of 0.08 [42]. The slides with seedlings were placed in 50-ml culture tubes containing 5 ml of liquid Fåhraeus medium and covered loosely by sterile Whatman paper. To determine the efficiency of Tipifarnib mw invasion, 25 plants inoculated with the particular strain were examined after 3, 4, 6, 8, and 10 days. To determine quantitatively adhesion efficiency and the growth rate on clover

roots by the Rt2472 and Rt24.2, the methods described by Fujishige et al. 2006 [78] were applied. For adhesion assay, three-day-old seedlings were inoculated by dipping their roots into bacterial suspensions of OD600 of 0.08 for 30 min or placed on Fåhraeus agar medium plates, inoculated by bacterial suspensions of OD600 of 0.08 (100 μl per seedling), and incubated for two days. The seedlings were placed on sterile Whatman paper to remove the excess of liquid, and subsequently were grown on Whatman paper wetted with liquid Fåhraeus

medium for 48 h. Next, roots were washed overnight with sterile water containing 0.05% Tween-20 on a rocking platform shaker to remove loosely associated cells. After removing the excess of liquid, the roots were weighed. To determine the number of attached bacteria, the root of each seedling was homogenized in 300 μl of water and root homogenate was plated in dilutions on 79CA plates for colony counting. Acknowledgements This research has been supported by the grant from the Ministry of Science and Higher Education no. N N303 092234. C-X-C chemokine receptor type 7 (CXCR-7) The authors would like to thank Prof. Teresa Urbanik-Sypniewska for help in the preparation and analyses of EPS and LPS. We thank Mrs Maria Małek for technical assistance. Electronic supplementary material Additional file 1: Figure S1 – Western blotting analysis of membrane and extracellular protein fractions of the R. leguminosarum wild type and the rosR mutant (Rt2472) with polyclonal antisera against PssB (A) and PssN (B). The migration positions of molecular mass markers are shown. Lines 1-6: extracellular protein fractions isolated from 10 ml of: Rt24.2 TY culture supernatant (1), Rt2472 TY culture (2), Rt24.2 M1 culture (3), Rt24.